2024 The integron database

The integron database

Author: jljy

August undefined, 2024

WebJun 2, 2016 · The similarity between attC sites is proportional to the number of cassettes in the integron, and is particularly low in clusters of attC sites lacking integron-integrases. The latter are unexpectedly abundant in genomes lacking integron-integrases or their remains, and have a large novel pool of cassettes lacking homologs in the databases. ... WebMar 29, 2024 · Integron: A mobile DNA element that can capture and carry genes, particularly those responsible for antibiotic resistance. Integrons do this by site-specific …

IntegronFinder 2.0: Identification and Analysis of …

WebApr 21, 2009 · The database has been compiled from a number of sources. The core of these data is manually annotated sequences identified as containing integrons according to the scientific literature [ 10 ]. These sequences were used to compile a … WebOct 14, 2024 · We analyzed resistance genes using the Comprehensive Antibiotic Resistance Database (CARD) 6 and identified features by referencing the ORF Finder program. 7 The … tsa rules wrapped christmas presents

Frontiers The large plasmid carried class 1 integrons mediated ...

WebApr 1, 2024 · AMR present in the food chain, crops, animals and environment can be mobilized into bacterial pathogens of humans and animals through horizontal gene transfer and thereby affect human and animal ... WebIn plasmid pZDHY95-VIM-2, bla VIM-2 is integrated into the class I integron In1722, designated by the INTEGRALL database, and the gene cassette array was 5ʹCS-aacA4ʹ-30-bla VIM-2-aacA4ʹ-3ʹCS. Unlike the typical class I integron, the 3ʹCS of In1722 was replaced by tniC/R, a functional transposon in Tn402 (Tn5090), instead of the qacEΔ1/sul1. WebAug 6, 2024 · Yang, Y. et al. ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database. philly cheese steak wings

INTEGRALL: a database and search engine for integrons, …

GenBank Overview - National Institutes of Health

WebINTEGRALL provides a public genetic repository for sequence data and nomenclature and offers to scientists an easy and interactive access to integron's DNA sequences, their … http://integrall.bio.ua.pt/?nomenclature philly cheese steak with cheese whizWebComprehensive annotation revealed that bla RSA-1 was carried by the gene cassette of a novel integron In2148 on Tn7413a, and bla NDM-1 was captured by an insertion sequence ISCR14-like on the ... was submitted to the GenBank database, under accession number CP092181. The Illumina reads of A. caviae 211703 was deposited as a SRA in the ... philly cheese steak with au jus

"WebMar 1, 2009 · Abstract. INTEGRALL is a freely available, text-based search system developed with the aim of collecting and organizing information on integrons in a single database. The current release (1.2 ... " - The integron database

The integron database

National Center for Biotechnology Information

WebFeb 26, 2024 · In summary, integrons accelerate resistance evolution by rapidly generating combinatorial variation in cassette composition while maintaining genomic integrity. eLife digest From urinary tract infections to bacterial pneumonia, many diseases can now be treated through a course of antibiotics. WebDec 8, 2024 · The GenBank database is designed to provide and encourage access within the scientific community to the most up-to-date and comprehensive DNA sequence information. Therefore, NCBI places no restrictions on …

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WebApr 21, 2009 · This database will help create more accurate annotations of bacterial genomes and facilitate a more representative sample of integron frequency and diversity. … WebJan 4, 2024 · The article “Conserved phylogenetic distribution and limited antibiotic resistance of class 1 integrons revealed by assessing the bacterial genome and plasmid …

WebOct 14, 2024 · Integrons are genetic platforms for captured gene cassettes, which are regarded as adaptation and evolution of bacteria ( José, 2024 ). They have traditional genetic structure of two conserved segments (5'-CS and 3'-CS) and a variable region ( Barraud and Ploy, 2015 ). WebA screening technique for integrons in members of the family Enterobacteriaceae and nonfermenting gram-negative bacteria by real-time PCR is reported. A total of 226 isolates of gram-negative bacteria obtained from a variety of clinical specimens were screened for class 1 integrons by real-time PCR performed on a LightCycler instrument.

http://integrall.bio.ua.pt/ WebJul 21, 2024 · The integron database is a compact database of both sequences and associated information for 2153 non-redundant whole integrons (Additional file 1: Table …

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WebApr 8, 2024 · The IntegronFinder tool [ 29] was used for the detection of integron loci in the draft genome, and the predicted integrons were illustrated with the statistical software R (v3.3.3, R Foundation for Statistical Computing, … tsars of bulgariaWebJan 16, 2024 · National Center for Biotechnology Information philly cheese steak with cheddarWebJul 21, 2024 · Background: Integrons, especially the class 1 integrons, are major contributors to the acquisition and dissemination of antibiotic resistance genes (ARGs). However, comprehensive knowledge of the... philly cheese steak with cheese wizWebDec 1, 2012 · The integron database is quite extensive, including just under 6,000 entries. Users can search the database by a number of options: accession number, journal, … tsa run hide fighthttp://integrall.bio.ua.pt/?intro tsar wifeWebThe Integron Database: HOME INTRO LIST SEARCH/BLAST NOMENCLATURE GLOSSARY LINKS CONTACTS ABOUT: Nomenclature of Gene Cassettes. To avoid incorrect naming and the attribution of different names to identical gene cassettes, INTEGRALL suggests the following nomenclature scheme. philly cheesesteak west sacramentoWebThe basic structure of an integron consists of an intI gene coding for an integrase, driven by a Pc promoter, and attI, an integron-associated primary recombination site, followed by gene cassettes. philly cheese steak with bacon